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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g061350.1 | ||||||||
Common Name | MTR_140s0008, MTR_3g061350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 285aa MW: 32884.5 Da PI: 8.838 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.4 | 2.6e-13 | 19 | 97 | 11 | 93 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++++r+ lp+kf+++hg s + ++ ++g W+v+ +k g+++++kGWk F + L+ g v+F+++g+s+f v Medtr3g061350.1 19 TNLQRIQLPNKFTRKHGVG--LSNPVLIKLPDGTGWKVYW--KKINGEMWFEKGWKTFTENYSLEHGCLVMFEYKGTSKFDVV 97 4567899*********644..44457788889********..999999****************************9999544 PP | |||||||
2 | B3 | 40.6 | 4.6e-13 | 192 | 282 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl..iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ff+vl++++ l+ ++l++p ++ +++ t ++ rsW+vkl +y++k +r l++GW F + gLk+gD++vF+l+++++ + Medtr3g061350.1 192 FFTVLINPNDLEANQLSVPDLKG-VIE---NKD-TNVMLLIGKRSWNVKLlrCYEGKYNR-RLSAGWHLFLTESGLKSGDVCVFELINKKDLVF 279 8999*************998664.222...233.334445688*******4333444444.599**********************98788755 PP EEE CS B3 93 vvk 95 +v+ Medtr3g061350.1 280 KVH 282 655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.083 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-18 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.39E-18 | 11 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.12E-12 | 11 | 99 | No hit | No description |
SMART | SM01019 | 2.3E-12 | 12 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-11 | 19 | 97 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-15 | 188 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-13 | 189 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-10 | 192 | 284 | No hit | No description |
PROSITE profile | PS50863 | 12.111 | 192 | 284 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0028 | 192 | 282 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-10 | 192 | 282 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MAREDSILPI LFFKIILQTN LQRIQLPNKF TRKHGVGLSN PVLIKLPDGT GWKVYWKKIN 60 GEMWFEKGWK TFTENYSLEH GCLVMFEYKG TSKFDVVILG QNAVEIDYDS SSDTNDENDN 120 VDHSDDDESV EILDEWLNRK KARQRSPFIS TRPHKKVRGD HEKTTKRTSS INWPKNARAQ 180 EVAQNFISCN PFFTVLINPN DLEANQLSVP DLKGVIENKD TNVMLLIGKR SWNVKLLRCY 240 EGKYNRRLSA GWHLFLTESG LKSGDVCVFE LINKKDLVFK VHVY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT009511 | 0.0 | CT009511.9 M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600453.1 | 0.0 | plant-specific B3-DNA-binding domain protein | ||||
TrEMBL | G8A2Z4 | 0.0 | G8A2Z4_MEDTR; Plant-specific B3-DNA-binding domain protein | ||||
STRING | GLYMA20G24268.1 | 8e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-17 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g061350.1 |
Entrez Gene | 11440147 |
Publications ? help Back to Top | |||
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